Lib Download

Functions and variables to download files and data.

idpconfgen.libs.libdownload.download_structure(pdbid, mmcif=False, **kwargs)

Download a PDB/CIF structure chains.

Parameters:

• pdbid (tuple of 2-elements) – 0-indexed, the structure ID at RCSB.org; 1-indexed, a list of the chains to download.

• **kwargs (as for save_structure_by_chains().)

idpconfgen.libs.libdownload.fetch_pdb_id_from_RCSB(pdbid, mmcif=False)

Fetch PDBID from RCSB.

Returns:

tuple (str, str) – urllib.request.urlopen.response.read() PDB file extension (.pdb, .cif, …)

idpconfgen.libs.libdownload.fetch_raw_CIFs(pdbid, *, ext='cif', **kwargs)

Download raw structure from RCSB without any filtering.

idpconfgen.libs.libdownload.fetch_raw_PDBs(pdbid, *, ext='pdb', **kwargs)

Download raw structure from RCSB without any filtering.

idpconfgen.libs.libdownload.fetch_raw_structure(pdbid, ext, **kwargs)

Download raw structure from RCSB without any filtering.